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Human papillomavirus - abbreviated taxonomic tree

• Alphapapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE. They preferentially infect the anogenital and ORAL MUCOSA in humans and primates, causing both malignant and benign neoplasms. Cutaneous lesions are also seen. Year introduced: 2007
  • Human papillomavirus - 10
    • Human papillomavirus
      type 10 Carlson JA et al. Detection of human papillomavirus type 10 DNA in eccrine syringofibroadenomatosis occurring in Clouston's syndrome. J Am Acad Dermatol. 1999 PMID: 10025758
    • Human papillomavirus
      type 28 Favre M et al. Human papillomavirus type 28 (HPV-28), an HPV-3-related type associated with skin warts. J Virol. 1989 Nov PMID: 2552164.
    • Human papillomavirus
      type 29 The cloning and partial characterization of human papillomavirus (HPV) type 29 is presented. By hybridization analyses, this virus appears to be related to HPV types associated with common warts and HPV types associated with flat warts (PMID: 2552165).
    • Human papillomavirus
      type 3 Yoo H et al. Detection and identification of human papillomavirus types isolated from Korean patients with flat warts. Microbiol Immunol. 2005 PMID: 16034206
    • Human papillomavirus
      type 77 Human Papillomavirus type 77 is a skin type found in non-melanoma skin cancers of immuno-compromised individuals (PMID: 16650526).
      Human papillomavirus (HPV77) associated with skin cancer displays UV responsiveness (PMID: 10508168).
    • Human papillomavirus type 94
  • Human papillomavirus - 16
    • Human papillomavirus
      type 16 MeSH A type of ALPHAPAPILLOMAVIRUS especially associated with malignant tumors of the CERVIX and the RESPIRATORY MUCOSA. Year introduced: 2006.
      Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705 ).
      52.6% prevalence in cervical pre-invasive lesions (PMID: 19107962).
    • Human papillomavirus
      type 31 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705 ).
      10.9% prevalence in cervical pre-invasive lesions (PMID: 19107962).
    • Human papillomavirus
      type 33 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705 ).
    • Human papillomavirus
      type 35 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 52 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 58 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 67 The complete nucleotide sequence of human papillomavirus type 67 (HPV 67) cloned from a vaginal intraepithelial neoplasia, has been determined. (PMID: 9857984).
  • Human papillomavirus - 18
    • Human papillomavirus
      type 18 MeSH A type of HUMAN PAPILLOMAVIRUS especially associated with malignant tumors of the genital and RESPIRATORY MUCOSA. Year introduced: 2006.
      HPV-18 is the second most prevalent human papillomavirus genotype found in cervical cancer. 7.3% prevalence in cervical pre-invasive lesions (PMID: 19107962 ).
    • Human papillomavirus
      type 39 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 45 HPV-45 is the third most prevalent human papillomavirus genotype found in cervical cancer. Human papillomavirus type 18 (HPV18) and HPV45 account for approximately 20% of all cervix cancers. It has been shown that HPV18, HPV45, and the recently discovered HPV97 comprise a clade sharing a most recent common ancestor within HPV alpha7 species (PMID: 19036820).
    • Human papillomavirus
      type 59 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus type 68
    • Human papillomavirus
      type 70 The genome of human papillomavirus (HPV) type 70 (HPV 70), isolated from a cervical condyloma, was obtained by cloning overlapping PCR products (PMID: 8815087).
    • Human papillomavirus type 97
  • Human papillomavirus - 2
    • Human papillomavirus
      type 2 Most commonly is associated with Verrucae vulgaris (benign skin warts) (PMID: 11409567). However severe verrucosis (cutaneous "horns") was documented (PMID: 17493077) as well as oral warts and carcinomas (PMID: 10069543, PMID: 3027288). and cutaneous carcinomas ("verrucous carcinoma") (PMID: 12828703).
    • Human papillomavirus
      type 27 Exhibits the strongest homology to HPV-2. Causes common warts.
      Human papillomavirus type 27 (HPV-27) and HPV-2c are isolates of the same virus as judged by genomic sequence identity (PMID: 8184550).
    • Human papillomavirus
      type 2a The low-risk human papillomavirus type 2a (HPV2a) has been found associated with benign skin epithelial tumors and has only been very rarely identified in malignized epithelia (PMID: 14554085).
    • Human papillomavirus
      type 2c Human papillomavirus type 27 (HPV-27) and HPV-2c are isolates of the same virus as judged by genomic sequence identity (PMID: 8184550).
    • Human papillomavirus
      type 57 Detection of human papillomavirus type 57 in the tissue of a plantar epidermoid cyst (PMID: 12920371). Verrucae vulgares frequently induce nail dystrophy when infection of the nail matrix occurs. Classic periungual warts are easily recognized by the experienced physician. A very unusual presentation of human papillomavirus (HPV) infection of the nail matrix and nail bed involving all 20 nails in an otherwise immunocompetent patient. Viral typing by in situ hybridization revealed HPV type 57 (PMID: 10583128). Human papillomavirus (HPV) type 57 DNA was detected in recurrent nasal inverted papillomatosis (PMID: 8719598).
  • Human papillomavirus - 26
    • Human papillomavirus
      type 26 Molecular DNA typing identified HPV 26 in the squamous cell carcinoma SCCs and in some premalignant lesions (PMID: 17634082). Human papillomavirus type 26-associated periungual squamous cell carcinoma in situ in a HIV-infected patient (PMID: 16198810).
    • Human papillomavirus
      type 51 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus type 69
    • Human papillomavirus
      type 82 HPV-82 has tropism for both the skin and the genital regions (PMID: 15752300). HPV-82 is an etiologic agent for vaginal and cervical intraepithelial neoplasia. By nucleotide sequence similarity of L1 open reading frame (ORF), HPV-82 was closely related to HPV-26, -51, and -69 (PMID: 10618284).
  • Human papillomavirus - 26
    • Human papillomavirus
      type 32 One of the etiological agents of a benign oral condition, focal epithelial hyperplasia. However, the previously characterized properties of its E7 oncoprotein suggest a possible malignant nature for this virus (PMID: 12359456).
    • Human papillomavirus
      type 42 Type 6, type 11, and the recently recognized type 42 were found in lesions showing features of condyloma or minimal histologic changes (PMID: 3041217). Nucleotide sequence and genome organization of the human papillomavirus type 42 was reported. HPV42 DNA was isolated from vulvar papillomas. It has been detected in benign forms of proliferative lesions only. The genome of HPV42 is 7917 bp long and shows the open reading frame pattern conserved in all HPVs sequenced so far. HPV42 has no high degree of sequence homology to any of the known HPVs (PMID: 1309278). Also, 50% of subclinical lesions showing only minimal histological changes (acanthosis and papillomatosis, without clear koilocytosis) contain HPV DNA, mostly type 42. (PMID: 1330920).
  • Human papillomavirus - 34
    • Human papillomavirus
      type 34 Detection of human papillomavirus type 34 in Bowen's disease on the pubic area (PMID: 16441634).
    • Human papillomavirus
      type 73 Human papillomavirus type 73 in primary and recurrent periungual squamous cell carcinoma (PMID: 18248476). Human papillomavirus type 73 (HPV 73) has been detected in some invasive cervical cancers and has been cloned from a squamous-cell carcinoma of the esophagus, but the epidemiology of this infection and its associated risk of cancer is unknown. HPV 73 is a mainly sexually transmitted, probably mostly transient, infection that does not confer any measurably increased risk for CIN development (PMID: 10652426). Type 73 human papillomavirus in esophageal squamous cell carcinoma: a novel association (PMID: 8640690). In the esophagus, the most common type was HPV 73 (PMID: 12050680).
  • Human papillomavirus - 53
    • Human papillomavirus
      type 30 Demonstration of human papillomavirus (HPV) type 30 in esophageal squamous-cell carcinomas by in situ hybridization (PMID: 8393840). HPV type 30 was found in three (13%), and HPV type 6/11 was found in two (9%) cases of penile carcinoma (PMID: 1655618). Noteworthy is the failure to disclose the recently described HPV type 30 DNA (suggested to be specific for laryngeal carcinomas) in any of the 116 carcinomas studied (PMID: 2819803).
    • Human papillomavirus
      type 53 The cloning and partial characterization of the genome of human papillomavirus type 53 is presented. The virus is a distinct type and is most closely related to human papillomavirus type 30 (PMID: 2552169). Persistent cervicovaginal infection with high-risk types of HPV is the major risk factor for subsequent cervical neoplasia. HPV53, part of the alpha 6 species group along with HPV types 30, 56, and 66, is one of the most prevalent high risk-related HPV types, yet little is known about the molecular basis of its benign behavior (PMID: 18681800). HPV 53 merits designation as a high-risk HPV based only [corrected] on the proportion of CIN 2,3 in follow-up biopsy (PMID: 16044055).
    • Human papillomavirus
      type 56 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 66 Have been classified as group 1 carcinogens by the International Agency for Research in Cancer (IARC) (PMID: 17979705).
    • Human papillomavirus
      type 54 Detection of human papillomavirus DNA in pterygia from different geographical regions (PMID: 12812887).
  • Human papillomavirus - 6
    • Human papillomavirus
      type 11 MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE. They preferentially infect the anogenital and ORAL MUCOSA in humans and primates, causing both malignant and benign neoplasms. Cutaneous lesions are also seen. Year introduced: 2007.
      
    • Human papillomavirus
      type 13 Is associated with oral focal epithelial hyperplasia (FEH) of oral mucosa; conjunctival papillomas similar to oral FEH were recorded (PMID: 15936914).
    • Human papillomavirus
      type 44 Study revealed that HPV-43 and HPV-44 together were found in 6 of 439 normal cervical tissues, in 8 of 195 cervical intraepithelial neoplasms, but in none of 56 cervical cancers tested thus far (PMID: 2542593).
    • Human papillomavirus
      type 6 MeSH A type of ALPHAPAPILLOMAVIRUS usually associated with GENITAL WARTS; and LARYNGEAL NEOPLASMS. Year introduced: 2006 .
      Grouped into low-risk (non-oncogenic) types, which cause benign anogenital warts (condyloma accuminata) (PMID: 15596319) and male anogenital warts (PMID: 19097933).
    • Human papillomavirus
      type 6a Verruciform xanthoma (VX) was documented (PMID: 11048983); recurrent condylomata acuminata of males genitalia due to human papillomavirus (HPV) type 6a; possible cause of an eyelid papilloma (PMID: 16855513).
    • Human papillomavirus
      type 6b Anogenital warts are a common clinical manifestation of genital infection with human papillomavirus type 6b (HPV-6b). Accumulating data indicate that an effective cellular immune response is required for the control of HPV infections. However, in a minority of patients there is a high rate of recurrence of wart lesions (PMID: 17425420).
    • Human papillomavirus
      type 6c The human papillomavirus type 6c (HPV-6c) genome was molecularly cloned from biopsy specimens of a juvenile-onset and an adult-onset respiratory-tract papillomata and a condyloma acuminatum of the cervix (PMID: 2554585).
    • Human papillomavirus
      type 6e Transcriptional activity of human papillomavirus type 6 in respiratory tract papillomata (PMID: 1650237).
  • Human papillomavirus - 61
    • Human papillomavirus
      type 72 Two new HPV types, HPV 72 and HPV 73, were identified in oral warts with atypia. The complete genomes of these viruses were cloned and sequenced. Other HPV types detected were HPV 2a, HPV 6b, HPV 13, HPV 16, HPV 18, HPV 55, HPV 59 and HPV 69 (PMID: 8635859).
    • Human papillomavirus
      type 81 Found in cervical lesions (20.0%) (PMID: 16024065).
    • Human papillomavirus
      type 83 HPV 83 is a relatively prevalent genital papillomavirus that has the largest genome of any characterized HPV and several other novel structural features that merit further study (PMID: 10405368).
    • Human papillomavirus
      type 102
    • Human papillomavirus
      type 61 The most common high-risk genotypes among high-risk HPV-positive women were HPV-61 (19.1%), -31 (13.1%), -52 (12.9%), -58 (12.5%), -83 (12.3%), -66 (12.0%), -51 (11.7%), -45 (11.2%), -56 (10.3%), -53 (10.2%), -16 (9.7%), and -62 (9.2%) (PMID: 18978096).
    • Human papillomavirus
      type 84 A BLAST homology search demonstrated that HPV 84 was most closely related to HPV 61 (89%), HPV 72 (86%), and HPV 83 (85%) by nucleotide sequence analysis of the L1 open reading frame, placing it in the HPV genome homology group A3. Previously, this virus had been identified as Pap155. Based on extensive epidemiological data, HPV 84 is a highly prevalent genital papillomavirus primarily detected in normal and HIV-infected women (PMID: 11145894) and cervical lesions (13.7%) (PMID: 16024065).
  • Human papillomavirus - 7
    • Human papillomavirus
      type 40 Detected HPV DNA in 40 of the 70 laryngeal papilloma cases (57%) (PMID: 18607996)
    • Human papillomavirus
      type 43 Prevalence studies revealed that HPV-43 and HPV-44 together were found in 6 of 439 normal cervical tissues, in 8 of 195 cervical intraepithelial neoplasms, but in none of 56 cervical cancers tested thus far (PMID: 2542593).
    • Human papillomavirus
      type 7 Frequently found in butchers' warts and has been demonstrated in oral and facial warts of HIV-infected patients. The reservoirs of HPV7 and the route of transmission are still unclear. HIV-negative, otherwise healthy patient with extensive, recurrent orofacial papillomatosis whose immune status proved to be normal and who had no history of meat handling is reported (PMID: 11501651).
• Betapapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE, causing cutaneous lesions in humans. Infections exist in latent form in the general population and are activated under conditions of IMMUNOSUPPRESSION. Year introduced: 2007.
  • Human papillomavirus - 49
    • Human papillomavirus
      type 49 The viral DNA, which is most closely related to the DNAs of HPVs seen in patients with epidermodysplasia (PMID: 2552167).
    • Human papillomavirus
      type 75 The DNA genomes of four new human papillomaviruses, HPV 75, HPV 76, HPV 77, and HPV 80, have been cloned, sequenced, and characterized. HPV 75, HPV 76 (both HPV 49-related), and HPV 77 (HPV 29-related) were isolated from benign cutaneous warts and HPV 80 (HPV 15-related) from histologically normal skin. HPV 77 has also been demonstrated in dysplastic warts and squamous cell carcinomas of the skin (PMID: 9454709).
    • Human papillomavirus
      type 76 Interestingly, HPV-76 was only detected in the group without frequent sun-exposure (P=0.001). These results suggest that increased UV radiation exposure may be a factor leading to a difference in prevalence of cutaneous HPV types (PMID: 18931088).
  • Human papillomavirus - 5
    • Human papillomavirus
      type 12 Cutaneous type of HPV (PMID: 15243477).
    • Human papillomavirus type 14
    • Human papillomavirus type 19
    • Human papillomavirus
      type 20 HPV-20 was detected in the malignant skin carcinoma. Transcripts of HPV-20 were also expressed in the carcinoma. These findings suggest that HPV-20 can be involved in the skin carcinogenesis (PMID: 8027315).
    • Human papillomavirus type 21
    • Human papillomavirus type 25
    • Human papillomavirus type 36
    • Human papillomavirus type 47
    • Human papillomavirus
      type 5 The results are suggestive of an involvement of HPV5 in the psoriasis and reinforce the hypothesis that the replication of this virus in the psoriatic keratinocytes may cause the epidermal hyperproliferation as well as the antigen stimulation, which induces autoimmune phenomena (PMID: 16232304). Human papilloma virus type 5 (HPV-5) has been associated closely with psoriatic skin (PMID: 15649303). PUVA therapy and human papillomavirus type 5 detection in psoriasis (PMID: 9804361). Psoriasis: A possible reservoir for human papillomavirus type 5, the virus associated with skin carcinomas of epidermodysplasia verruciformis (PMID: 9540967).
    • Human papillomavirus type 5b
    • Human papillomavirus type 8
    • Human papillomavirus type 93
  • Human papillomavirus - 9
    • Human papillomavirus type 107
    • Human papillomavirus type 110
    • Human papillomavirus type 111
    • Human papillomavirus type 15
    • Human papillomavirus type 17
    • Human papillomavirus type 22
    • Human papillomavirus type 23
    • Human papillomavirus type 37
    • Human papillomavirus type 38
    • Human papillomavirus type 80
    • Human papillomavirus type 9
• Deltapapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE causing fibropapillomas in their respective ungulate hosts. Species infected include cattle, European elk, deer, and sheep. Year introduced: 2007.
  • Bovine papillomavirus - 1 Bovine papillomavirus (BPV) induces papillomas of cutaneous or mucosal epithelia in cattle. The papillomas are usually benign tumours that occasionally persist and provide the focus for malignant transformation to squamous cell carcinoma. BPV isone of the most extensively studied papillomaviruses. For a long time, the transcription map of BVP-1 has been the best known map for our understanding of the PV gene expression.
    • Bovine papillomavirus type 1
    • Bovine papillomavirus type 2
• Gammapapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE, which cause cutaneous lesions in humans. They are histologically distinguishable by intracytoplasmic INCLUSION BODIES which are species specific. Year introduced: 2007
  • Human papillomavirus - 4
    • Human papillomavirus type 4
    • Human papillomavirus type 65
    • Human papillomavirus type 95
  • Human papillomavirus - 48
    • Human papillomavirus type 48
  • Human papillomavirus - 50
    • Human papillomavirus type 50
  • Human papillomavirus - 60
    • Human papillomavirus
      type 60 Plantar epidermoid cysts with human papillomavirus (HPV) infection are not rare in Japan. Most of them show the cytopathic effect of HPV type 60 - homogeneous intracytoplasmic inclusion bodies (PMID: 12920371). Human papillomavirus type 60 (HPV-60) is the only virus type that has been identified in epidermoid cysts (PMID: 9714246).
  • Human papillomavirus - 88
    • Human papillomavirus type 88
• Mupapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE, causing cutaneous lesions in humans. Year introduced: 2007.
  • Human papillomavirus - 1
    • Human papillomavirus type 1a
  • Human papillomavirus - 63
    • Human papillomavirus type 63
• Nupapillomavirus
  MeSH A genus of DNA viruses in the family PAPILLOMAVIRIDAE, causing cutaneous lesions in humans. Year introduced: 2007.
  • Human papillomavirus - 41
    • Human papillomavirus type 41

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